\documentclass[11pt, % font size: 11pt or 12pt
phd, % degree: ms or phd
onehalfspacing % spacing: onehalfspacing or doublespacing
]{ncsuthesis}
%%----------------------------------------------------------------------------%%
%%------------------------------ Import Packages -----------------------------%%
%%----------------------------------------------------------------------------%%
\usepackage{booktabs} % professionally typeset tables
\usepackage{amsmath}%,amssymb,amsfonts}
\usepackage{textcomp} % better copyright sign, among other things
%\usepackage{xcolor}
\usepackage{lipsum} % filler text
\usepackage{subfig} % composite figures
%%ORTIZ PACKAGES
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%% Old bibliography commands
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%5
%\usepackage[super,sort&compress,comma,square,authoryear]{natbib} %\cite command %Added by Ortiz
%use the following line with plainnat
%\usepackage[super,sort&compress,comma,square,numbers]{natbib} %\cite command %Added by Ortiz
%\usepackage{natbib}
%\usepackage[style=alphabetic,natbib=true,backend=bibtex
%sorting=nyt,firstinits=true,isbn=false,doi=false,url=false]{biblatex} %couldn't get backend=biber to work
%\usepackage{filecontents}
%\bibliography{Ortiz-thesis2}
%\bibliographystyle{plain}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%%%%%%%%% Hack for alphanumeric bibliography
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%5
\RequirePackage[
style=alphabetic,%numeric-comp,%authoryear-comp,%
sorting=nyt,%ynt
hyperref=true, %
firstinits=true,%
backend=bibtex,
natbib=true,
url=false,
isbn=false,
maxnames=2, %for et al to be used
maxalphanames=1, %to avoid printing a + for every et al in the abbreviation
doi=false]{biblatex}
%needed to do et al after two names
%http://tex.stackexchange.com/questions/44048/use-et-al-in-biblatex-custom-style
\renewcommand*{\finalnamedelim}{\addspace\&\space}
%Simplify abbreviation (the default uses either one or two authors and it indicates et al with a +)
%The following five lines make it so that only the first author is used in the abbreviation
%http://tex.stackexchange.com/questions/27956/label-only-from-first-author
\renewcommand*{\labelalphaothers}{}
\renewcommand*{\intitlepunct}{}
\DefineBibliographyStrings{german}{in={}}
\DefineBibliographyStrings{english}{in={}}
\DeclareNameAlias{sortname}{last-first}
\DeclareNameAlias{default}{last-first}
%\AtEveryCitekey{\ifciteseen{}{\defcounter{maxnames}{99}}} %authoryear
\DeclareFieldFormat[article,periodical]{volume}{\mkbibbold{#1}}
\makeatletter
\newrobustcmd*{\parentexttrack}[1]{%
\begingroup
\blx@blxinit
\blx@setsfcodes
\blx@bibopenparen#1\blx@bibcloseparen
\endgroup}
\AtEveryCite{%
\let\parentext=\parentexttrack%
\let\bibopenparen=\bibopenbracket%
\let\bibcloseparen=\bibclosebracket}
\makeatother
\renewcommand{\cite}[1]{\parencite{#1}}
\renewbibmacro{in:}{%
\ifentrytype{article}{}{%
\printtext{\bibstring{in}\intitlepunct}}}
\AtEveryBibitem{\clearfield{month}}
\AtEveryBibitem{\clearfield{language}}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%\addbibresource{Ortiz-thesis2.bib}
%\addbibresource{Ortiz-thesisURL.bib}
\addbibresource{YourName-thesis.bib}
\defbibheading{myheading}[BIBLIOGRAPHY]{
\chapter*{#1}
%\centerline{\bf{#1}}
\markboth{#1}{#1}}
%\usepackage{amsmath,amssymb,amsfonts} %amssymb and amsfonts cannot be used in conjunction with mdput
%\usepackage{graphicx,subfig}% Include figure files
\usepackage{dcolumn}% Align table columns on decimal point
\usepackage{bm}% bold math
%\usepackage{hyperref}% add hypertext capabilities
%\usepackage{hypernat}% make hyperref and natbib work together
\usepackage{cancel}
\usepackage{verbatim}% multiline commenting
\usepackage{ifthen}
\usepackage{url}
\usepackage{sectsty}
\usepackage{balance}
%\usepackage{caption}
\usepackage{graphicx} %eps figures can be used instead
\usepackage{lastpage}
\usepackage[format=plain,justification=RaggedRight,singlelinecheck=false,font=small,labelfont=bf,labelsep=space]{caption}
\usepackage{fancyhdr}
\pagestyle{fancy}
%http://tex.stackexchange.com/questions/100817/error-when-using-bc-from-abbrevs-in-caption
%Getting BC
\usepackage{abbrevs}
\usepackage{etoolbox}
\robustify{\DateMark} % after having loaded abbrevs
\usepackage{units} %Needed to solve bug from citation Hydrodynamics in 21/2 dimensions
%see http://www.latex-community.org/viewtopic.php?f=5&t=989
\usepackage[sharp]{easylist} %used for brainstorming purposes
%\usepackage{mathabx} % used for \Asterisk for convolution %conflicts with \widering
%compile on single pass
%\usepackage[backend=biber,...]{biblatex}
%%%%%%%%%%%%
%%% Hack to make chapters start on odd pages
% http://tex.stackexchange.com/questions/73591/how-to-have-a-blank-even-page-before-every-chapter
%%%%%%%%%%%%
%\newcommand{\ensureoddstart}{\checkoddpage\ifoddpage\else\newpage\mbox{}\fi}
%\newcommand{\ensureoddstart}{}
%%%Fancy tables
%http://tex.stackexchange.com/questions/94032/fancy-tables-in-latex
\usepackage[table]{xcolor}
\usepackage{array,booktabs}
\usepackage{colortbl}
\newcolumntype{L}{@{}>{\kern\tabcolsep}l<{\kern\tabcolsep}}
%%%%%%%%%%
%%%%% Hack to allow more levels in outline
%%%%%%%%%%
%\setcounter{secnumdepth}{5}
%\setcounter{tocdepth}{5} %may violate ETD
%Usage http://pleasemakeanote.blogspot.com/2010/06/how-to-activate-subsubsubsection-in.html
%\section{} % level 1
%\subsection{} % level 2
%\subsubsection{} % level 3
%\paragraph{} % level 4 - equivalent to subsubsubsection
%\subparagraph{} % level 5
%http://tex.stackexchange.com/questions/60209/how-to-add-an-extra-level-of-sections-with-headings-below-subsubsection
\usepackage{titlesec}
\setcounter{secnumdepth}{4}
\titleformat{\paragraph}
{\normalfont\normalsize\bfseries}{\theparagraph}{1em}{}
\titlespacing*{\paragraph}
{0pt}{3.25ex plus 1ex minus .2ex}{1.5ex plus .2ex}
%%%%%%%%%%%%%%%%%%%%%%%%%%
%%%% Hack for containing figures within sections
%%%%%%%%%%%%%%%%%%%%%%%%%%%%
%http://ctan.org/pkg/placeins
\usepackage{placeins}
%De�fines a \FloatBar�rier com�mand, be�yond which floats may not pass; use�ful, for ex�am�ple, to en�sure all floats for a sec�tion ap�pear be�fore the next \sec�tion com�mand.
%%%Hack for centering all figures
%\makeatletter
%\g@addto@macro\@floatboxreset\centering
%\makeatother
%%----------------------------------------------------------------------------%%
%%---------------------------- Formatting Options ----------------------------%%
%%----------------------------------------------------------------------------%%
%%
%% -------------------------------------------------------------------------- %%
%% Disposition format -- any titles, headings, section titles
%% These formatting commands affect all headings, titles, headings,
%% so sizing commands should not be used here.
%% Formatting options to consider are
%% + \sffamily - sans serif fonts. Dispositions are often typeset in
%% sans serif, so this is a good option.
%% + \rmfamily - serif fonts
%% + \bfseries - bold face
%\dispositionformat{\sffamily\bfseries} % bold and sans serif
\dispositionformat{\bfseries} % bold and serif
%% -------------------------------------------------------------------------- %%
%% Formatting for centered headings - Abstract, Dedication, etc. headings
%% This is where one might put a sizing command.
%% \MakeUppercase can be used to typeset all headings in uppercase.
\headingformat{\large\MakeUppercase} % All letters uppercase
%\headingformat{\large} % Not all uppercase
%\headingformat{\Large\scshape} % Small Caps, used with serif fonts.
%% Typographers recommend using a normal inter-word space after
%% sentences. TeX's default is to add an wider space, but \frenchspacing
%% gives a normal spacing. Comment out the following line if you prefer
%% wider spaces between sentences.
\frenchspacing
%% -------------------------------------------------------------------------- %%
%% Optional packages
%% A number of compatible packages to improve the look and feel of
%% your document are available in the file optional.tex
%% (For example, hyperlinks, fancy chapter headings, and fonts)
%% To use these options, uncomment the next line and see optional.tex
\include{optional}
%solve bug from fancyhdr in optional
%http://nw360.blogspot.com/2006/11/latex-headheight-is-too-small.html
\setlength{\headheight}{14pt}
%%----------------------------------------------------------------------------%%
%%---------------------------- Content Options -------------------------------%%
%%----------------------------------------------------------------------------%%
%% Size of committee: 3, 4, 5, or 6 -- this number includes the chair
\committeesize{4}
%% Members of committee
%% Each of the following member commands takes an optional argument
%% to specify their role on the committee.
%% For co-chairs, use the commands:
%% \cochairI{Doug Dodd}
%% \cochairII{Chris Cox}
%%
\chair{Doug Dodd}
\memberI{Alex Anderson}
\memberII{Bobby Brown}
\memberIII{Chris Cox} % unnecessary if committeesize=3
\memberIV{Fred Ford} % unnecessary if committeesize=3 or 4
\memberV{Edna Everitt} % unnecessary if committeesize=3, 4, or 5
%% Student writing thesis, \student{First Middle}{Last}
\student{John Mark}{Smith} % a full middle name
%\student{John M.}{Smith} % a middle initial
%% Degree program
\program{Physics}
%% Thesis Title
%% Keep in mind, according to ETD guidelines:
%% + Capitalize first letter of important words.
%% + Use inverted pyramid shape if title spans more than one line.
%%
%% Note: To break the title onto multiple lines, use \break instead of \\.
%\thesistitle{A North Carolina State University Sample \LaTeX{} Thesis \break
%with a Title So Long it Needs a Line Break}
\thesistitle{A North Carolina State University Sample \LaTeX{} Thesis \break
with a Title So Long it Needs a Line Break}
%% Degree year. Necessary if your degree year doesn't equal the current year.
%\degreeyear{1995}
%%----------------------------------------------------------------------------%%
%%---------------------------- Personal Macros -------------------------------%%
%%----------------------------------------------------------------------------%%
%% A central location to add your favorite macros.
%% A few examples to get you started.
\newcommand{\uv}[1]{\ensuremath{\mathbf{\hat{#1}}}}
\newcommand{\bo}{\ensuremath{\mathbf{\Omega}}}
\newcommand{\eref}[1]{Eq.~\ref{#1}}
\newcommand{\fref}[1]{Fig.~\ref{#1}}
\newcommand{\tref}[1]{Table~\ref{#1}}
\newcommand{\del}{\nabla}
\renewcommand{\exp}[1]{e^{#1}}
\newcommand{\Conv}{\mathop{\scalebox{1.5}{\raisebox{-0.2ex}{$\ast$}}}}%
\usepackage{color}
%\newcommand{\NEW}[1]{\textcolor{blue}{#1}}
\newcommand{\NEW}[1]{#1}
\newcommand{\COMMENT}[1]{\textcolor{green}{#1}}
\newcommand{\NOTER}[1]{\textcolor{orange}{#1}}
\newcommand{\NOTEC}[1]{\textcolor{blue}{#1}}
\newcommand{\NOTEK}[1]{\textcolor{magenta}{#1}}
\newcommand{\mum}{\ensuremath{{\mu}\text{m}}}
%This makes it so that you can add short paths in your .tex by including the folders where you store your images in the search path
\graphicspath{{./Chapter-1/figs/}{./Chapter-2/figs/}{./Chapter-3/figs/}}%{./Chapter-4/figs/}{./Chapter-5/figs/}{./Chapter-6/figs/}}
%%---------------------------------------------------------------------------%%
\usepackage{calc}
%% Capital letter height
\newlength{\chaptercapitalheight}
\settoheight{\chaptercapitalheight}{D}
\newlength{\chapterfootskip}
\setlength{\chapterfootskip}{\chaptercapitalheight}
\addtolength{\chapterfootskip}{2\baselineskip}
\addtolength{\chapterfootskip}{0.5ex} % A little extra space to ensure there are 2 full double spaced lines
%\def\chapterfootskipnum{\chapterfootskip}
\renewcommand{\listfigurename}{LIST OF FIGURES}
\renewcommand{\listtablename}{LIST OF TABLES}
\renewcommand{\bibname}{BIBLIOGRAPHY}
%\renewcommand{\cfttoctitlefont}{\centering\ncsu@headingformat}
%http://tex.stackexchange.com/questions/47184/height-of-figure-caption-textheight
\newlength\graphht
\newcommand\calculategraphicstargetheight[1]{%
\setlength\graphht{\textheight
-\parskip
-\abovecaptionskip -\belowcaptionskip
-(12pt * #1) % assuming baselineskip of 12pt in caption
-\chapterfootskip
}}
%\usepackage{titlesec}
%landscape support in fancyhdr from http://tex.stackexchange.com/questions/9071/how-to-translate-and-rotate-the-heading-of-landscaped-pages
\usepackage{pdflscape}
\usepackage{tikz}
\fancypagestyle{lscapedplain}{%
\fancyhf{}
\fancyfoot{%
\tikz[remember picture,overlay]
\node[outer sep=1cm,above,rotate=90] at (current page.east) {\thepage};}
\renewcommand{\headrulewidth}{0pt}
\renewcommand{\footrulewidth}{0pt}
}
\begin{document}
\pagestyle{plain}
%%---------------------------------------------------------------------------%%
\frontmatter
\include{front}
%%---------------------------------------------------------------------------%%
\mainmatter
\pagestyle{fancy}
\newgeometry{margin=1in,lmargin=1.25in,footskip=\chapterfootskip, includehead, includefoot}
\include{Chapter-1/Chapter-1}
\include{Chapter-2/Chapter-2}
\include{Chapter-3/Chapter-3}
%\include{Chapter-4/Chapter-4}
%\include{Chapter-5/Chapter-5}
%\include{Chapter-6/Chapter-6}
%\restoregeometry
%%---------------------------------------------------------------------------%%
%% Bibliography
%% You can use the bibitem list.
%\bibliographystyle{unsrt}
%\begin{%thebibliography}{99}
%\bibitem{cb02}
%Casella, G. and Berger, R.L. (2002)
%\newblock {\it Statistical Inference, Second Edition.}
%Duxbury Press, Belmont, CA.
%
%\bibitem{t06}
%Tsiatis, A.A. (2006)
%\newblock {\it Semiparametric Theory and Missing Data.}
%Springer, New York.
%
%\end{thebibliography}
%% or use BibTeX
%\bibliography{Ortiz-thesis}{}
%\bibliographystyle{plain}
%\nociterec{*}
%\bibliographystyle{plainnat}%plainnat is necessary to enable the use of citet. Natbib style file.
%\bibliography{Ortiz-thesis2}
%\ensureoddstart
\begin{spacing}{1}
\setlength\bibitemsep{11pt} %22pt = 2*11pt, where fontsize is 11pt
\addcontentsline{toc}{chapter}{{\uppercase{\bibname}}} %\textorpdfstring and \uppercase needed due to hyperref package http://www.latex-community.org/forum/viewtopic.php?f=44&t=16601
%\vspace{-0.5in}
\titleformat{\chapter}[display]{\bf\filcenter
}{\chaptertitlename\ \thechapter}{11pt}{\bf\filcenter}
\titlespacing*{\chapter}{0pt}{-0.5in-9pt}{22pt}
\printbibliography[heading=myheading]
\end{spacing}
%\bibliographystyle{apalike}
%%---------------------------------------------------------------------------%%
% Appendices
%\ensureoddstart
\restoregeometry
\appendix
\newgeometry{margin=1in,lmargin=1.25in,footskip=\chapterfootskip, includehead, includefoot}
\include{Appendix-A/Appendix-A}
\restoregeometry
%%---------------------------------------------------------------------------%%
%\ensureoddstart
\backmatter
\end{document}