\documentclass[10pt,a4paper,twoside,openright,titlepage,fleqn,%
headinclude,footinclude,BCOR5mm,%
numbers=noenddot,cleardoublepage=empty]{scrreprt}
\usepackage{graphicx}
\usepackage{amsmath,amssymb,amsthm}
\usepackage[utf8]{inputenc}
\usepackage[square]{natbib}
\usepackage{subcaption}
\usepackage{hyperref}
\usepackage[ruled,vlined,algochapter,linesnumbered]{algorithm2e}
\usepackage{chngpage}
\usepackage{calc}
\usepackage{ccicons}
\usepackage{xspace}
\usepackage{booktabs}
\usepackage[english]{babel}
\usepackage{listings}
\usepackage{scrhack} % ignore warnings about deprecated KOMA-Script
\usepackage{apalike}
\usepackage[printonlyused,smaller,withpage]{acronym}
\usepackage[floatperchapter,dottedtoc,eulerchapternumbers,pdfspacing,linedheaders]{classicthesis}
\usepackage{arsclassica}
\usepackage{pdfpages}
\input{mysettings}
\begin{document}
\pagenumbering{roman}
\pagestyle{plain}
%******************************************************************
% The cover page
% (it this needs to be manually edited and exported as a PDF)
% (see folder README.txt in folder 'cover')
% (I would not include it for the version you put in the repository)
%******************************************************************
\includepdf{cover/cover_front.pdf}
%******************************************************************
% Frontmatter
%******************************************************************
\input{front/titlepage}
\clearpage
\input{front/titleback}
\clearpage
\input{front/abstract}
\input{front/acknow}
\pagestyle{scrheadings}
\clearpage
\input{front/contents}
\clearpage
\input{front/acronyms}
\cleardoublepage
%******************************************************************
% Mainmatter
%******************************************************************
\pagenumbering{arabic}
\input{chapters/introduction}
\input{chapters/relatedwork}
% *****************************************************************
% Backmatter
%******************************************************************
\appendix
%%%
%- bibliography
\bibliographystyle{apalike}
\bibliography{myreferences}
%%%
%- the mandatory reflection can be put as an Appendix
\cleardoublepage
\include{appendices/someumldia}
\clearpage
\include{back/colophon}
\cleardoublepage
% \input{back/Index}
\includepdf{cover/cover_back.pdf}
\end{document}